BIOLOGY FACULTY  ALEXANDRU IOAN CUZA UNIVERSITY of IAŞI, Romania

   

     IDENTIFICATION AND CHARACTERIZATION OF

  BIOLOGICAL ACTIVE MOLECULES- BioActive


Innovative digital manufacturing solution of 3D printed molecular models for better education in bio-molecular sciences
 (EDUMOL3D), PN-IV-P7-7.1-PED-2024-0343, No. 25PED/2025

  • Research project funded by the Ministry of Research, Innovation and Digitization, UEFISCDI, project number PN-IV-P7-7.1-PED-2024-0343, within PNCDI IV;
  • Funding amount: 780.400 lei (156.000 euros) - 750 000 lei (150.000 euros) from the state budget; 30 400 lei (6000 euros) from private budget; 
  • Partners:  Coordinator  - Alexandru Ioan Cuza University of Iasi, Romania (628 400 lei, about  126 000 euros) Partner - PROTECH R&D S.R.L. (152.000,00 lei, about 30000 euros)
  • Funding period: 31 months (08/01/2025 – 31/12/2026).

Project summary:


   The quality of bio-molecular sciences education influences fundamentally many aspects of society and our everyday life. One key aspect of bio-molecular education is the structure-to-function relationship in molecules. While this is usually taught using 2D models and images, as well as 3D animations and movies, it has been shown that students prefer the usage of physical models of complex macromolecules. Touching and handling models offer them a more complete and immersive learning experience. Several solutions for creating and fabricating physical models of complex macromolecules from different materials have emerged, but none have the flexibility and low cost of 3D printing. The challenge here is converting the available and scientifically correct structural data into 3D printable files. This proposal is using a workflow developed by the PI ( for details please visit modelemoleculare.ro and 10.1002/bmb.21493)  and aims to create an automated web service for converting structural data from scientific databases such as RCSB PDB into 3D printable files and printing instructions. Unlike other services available, this tool will focus on printing molecular models on cheap consumer-grade printers and on providing clear printing instructions. The service will be released under the  CC BY license as a supplementary measure to ensure the long-term impact of the project - improve the quality of education in all fields related to bio-molecular sciences by providing access for educators and students to scientifically sound and cheap teaching materials.


Project members: 

Alexandru Ioan Cuza University of Iași
  • Marius Mihasan, PhD,
Biochemistry and Molecular Biology
U-1700-038N-4243
  • Liviu-Andrei Scutelnicu, PhD,
Computer Sciences U-1700-032N-7210
  • Andreea-Mihaela Mlesnita, PhD student
Biochemistry and Molecular Biology U-2400-072L-0293
PROTECH R&D S.R.L.

  • Constantin Stoica
3D Printing specialist
U-1900-063U-8614





News Project's objectives and activities: Publications

Project's objectives and
activities:
The project aims to create an automated web service for converting structural data from scientific databases such as RCSB PDB into 3D printable files and printing instructions. Unlike other services available, this tool will focus on printing molecular models on cheap consumer-grade printers and on providing clear printing instructions. The service will be released under the  CC BY license as a supplementary measure to ensure the long-term impact of the project - improve the quality of education in all fields related to bio-molecular sciences by providing access for educators and students to scientifically sound and cheap teaching materials.


Activities in 2025:

Step 1. Define the technical requirements of the web-service.
A.1.1 - Define and specify the requirements for rendering the molecular models
A.1.2 -  Define the requirements of the web platform in terms of user-interface and technologies used
A.1.3 - Establish the technical requirements for the integration of the web-service with PROTECH web-site/platform
A.2.1 - Select and test the best software platform for developing the web-based pipeline
A2.2 - Identify the most suitable molecular visualization package to be used for digital 3D design files rendering in a web-based environment.
A2.3 - Create a pipeline for the automation of the digital 3D design files generation process
A.2.4 - Integrate the pipeline with the selected web-platform

Brief progress report at  the end of 2025 will be available here.

Activities in 2026:

A.3.1 - Identify and select 5 representative molecules (samples) to be used as a benchmark for assessing printability.
A.3.2 - Printability assessment of the selected benchmark molecular models on 3D printers using various technologies.  (e.g. FDM, SLA).
A.3.3 - Assessment of printing quality
A.3.4 - Improve the scripts used by the web-based automatic pipeline and create printing instructions by printing process optimization.
A.3.5 - Create help pages and guidelines for using the automatic web-service.
A.4.1 - Disseminate the availability of the automatic web-based service in the life-sciences community
A.4.2 - Testing the automatic web-based service by printing models generated by real users

Continuous activities
A.5.1 - Preparation of manuscripts, posters, lectures, workshops materials, and other dissemination materials
A.5.2 - Performing the required data analysis and literature survey for appropriate decision making and reports writing
A.5.3 - Monitoring progress thorough various WPs, mitigating associated risks, and managing the availability of resources

Contact

Project manager:

Marius Mihasan, PhD

Adress: RoomB228, Faculty of Biology, Alexandru I Cuza University of Iasi, Carol I B-vd., No. 20A, Iaşi, 700506, Romania
E-mail:    marius.mihasan@uaic.ro
Phone:   40(0)232201102 - 2434
Fax:         40(0)232201472
Further details: here
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